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Antosh MP, Wijesinghe DD, Shrestha S, Lanou R, Huang YH, Hasselbacher T, Fox D, Neretti N, Sun S, Katenka N, Cooper LN, Andreev OA, Reshetnyak YK.
"Enhancement of radiation effect on cancer cells by gold-pHLIP." Proceedings of the National Academy of Sciences, vol. 112, no. 17, 2015, pp. 5372-6.
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Boylan JM, Sanders JA, Neretti N, Gruppuso PA.
"Profiling of the fetal and adult rat liver transcriptome and translatome reveals discordant regulation by the mechanistic target of rapamycin (mTOR)." American journal of physiology. Regulatory, integrative and comparative physiology, vol. 309, no. 1, 2015, pp. ajpregu.00114.2015.
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Hofmann JW, Zhao X, De Cecco M, Peterson AL, Pagliaroli L, Manivannan J, Hubbard GB, Ikeno Y, Zhang Y, Feng B, Li X, Serre T, Qi W, Van Remmen H, Miller RA, Bath KG, de Cabo R, Xu H, Neretti N, Sedivy JM.
"Reduced expression of MYC increases longevity and enhances healthspan." Cell, vol. 160, no. 3, 2015, pp. 477-88.
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Antosh, Michael, Fox, David, Hasselbacher, Thomas, Lanou, Robert, Neretti, Nicola, Cooper, Leon N.
"Drosophila Melanogaster Show a Threshold Effect in Response to Radiation." Dose-Response, vol. 12, no. 4, 2014, pp. 551-581.
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Whitaker R, Gil MP, Ding F, Tatar M, Helfand SL, Neretti N.
"Dietary switch reveals fast coordinated gene expression changes in Drosophila melanogaster." Aging, vol. 6, no. 5, 2014, pp. 355-68.
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Lamming DW, Demirkan G, Boylan JM, Mihaylova MM, Peng T, Ferreira J, Neretti N, Salomon A, Sabatini DM, Gruppuso PA.
"Hepatic signaling by the mechanistic target of rapamycin complex 2 (mTORC2)." The FASEB Journal, vol. 28, no. 1, 2014, pp. 300-15.
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Ding, Feifei, Gil, M. Pilar, Franklin, Michael, Ferreira, Jonathan, Tatar, Marc, Helfand, Stephen L., Neretti, Nicola.
"Transcriptional response to dietary restriction in Drosophila melanogaster." Journal of Insect Physiology, vol. 69, 2014, pp. 101-106.
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Antosh M, Fox D, Cooper LN, Neretti N.
"CORaL: comparison of ranked lists for analysis of gene expression data." Journal of Computational Biology, vol. 20, no. 6, 2013, pp. 433-43.
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Sedivy JM, Kreiling JA, Neretti N, De Cecco M, Criscione SW, Hofmann JW, Zhao X, Ito T, Peterson AL.
"Death by transposition - the enemy within?." BioEssays : news and reviews in molecular, cellular and developmental biology, vol. 35, no. 12, 2013, pp. 1035-43.
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Jiang N, Du G, Tobias E, Wood JG, Whitaker R, Neretti N, Helfand SL.
"Dietary and genetic effects on age-related loss of gene silencing reveal epigenetic plasticity of chromatin repression during aging." Aging, vol. 5, no. 11, 2013, pp. 813-24.
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De Cecco M, Criscione SW, Peckham EJ, Hillenmeyer S, Hamm EA, Manivannan J, Peterson AL, Kreiling JA, Neretti N, Sedivy JM.
"Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements." Aging Cell, vol. 12, no. 2, 2013, pp. 247-56.
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De Cecco M, Criscione SW, Peterson AL, Neretti N, Sedivy JM, Kreiling JA.
"Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues." Aging, vol. 5, no. 12, 2013, pp. 867-83.
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Chamseddin KH, Khan SQ, Nguyen ML, Antosh M, Morris SN, Kolli S, Neretti N, Helfand SL, Bauer JH.
"takeout-dependent longevity is associated with altered Juvenile Hormone signaling." Mechanisms of Ageing and Development, vol. 133, no. 11-12, 2012, pp. 637-46.
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Reich A, Neretti N, Freiman RN, Wessel GM.
"Transcriptome variance in single oocytes within, and between, genotypes." Mol. Reprod. Dev., vol. 79, no. 8, 2012, pp. 502-3.
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Antosh M, Whitaker R, Kroll A, Hosier S, Chang C, Bauer J, Cooper L, Neretti N, Helfand SL.
"Comparative transcriptional pathway bioinformatic analysis of dietary restriction, Sir2, p53 and resveratrol life span extension inDrosophila." Cell Cycle, vol. 10, no. 6, 2011, pp. 904-11.
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Yap CS, Peterson AL, Castellani G, Sedivy JM, Neretti N.
"Kinetic profiling of the c-Myc transcriptome and bioinformatic analysis of repressed gene promoters." Cell Cycle, vol. 10, no. 13, 2011, pp. 2184-96.
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Antosh M, Fox D, Helfand SL, Cooper LN, Neretti N.
"New comparative genomics approach reveals a conserved health span signature across species." Aging, vol. 3, no. 6, 2011, pp. 576-83.
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Wood JG, Hillenmeyer S, Lawrence C, Chang C, Hosier S, Lightfoot W, Mukherjee E, Jiang N, Schorl C, Brodsky AS, Neretti N, Helfand SL.
"Chromatin remodeling in the aging genome of Drosophila." Aging Cell, vol. 9, no. 6, 2010, pp. 971-8.
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Bauer J, Antosh M, Chang C, Schorl C, Kolli S, Neretti N, Helfand SL.
"Comparative transcriptional profiling identifies takeout as a gene that regulates life span." Aging, vol. 2, no. 5, 2010, pp. 298-310.
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Jimenez RH, Lee JS, Francesconi M, Castellani G, Neretti N, Sanders JA, Sedivy J, Gruppuso PA.
"Regulation of gene expression in hepatic cells by the mammalian Target of Rapamycin (mTOR)." PLoS ONE, vol. 5, no. 2, 2010, pp. e9084.
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Wang PY, Neretti N, Whitaker R, Hosier S, Chang C, Lu D, Rogina B, Helfand SL.
"Long-lived Indy and calorie restriction interact to extend life span." Proceedings of the National Academy of Sciences, vol. 106, no. 23, 2009, pp. 9262-7.
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Neretti N, Wang PY, Brodsky AS, Nyguyen HH, White KP, Rogina B, Helfand SL.
"Long-lived Indy induces reduced mitochondrial reactive oxygen species production and oxidative damage." Proceedings of the National Academy of Sciences, vol. 106, no. 7, 2009, pp. 2277-82.
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Liu YC, Li F, Handler J, Huang CR, Xiang Y, Neretti N, Sedivy JM, Zeller KI, Dang CV.
"Global regulation of nucleotide biosynthetic genes by c-Myc." PLoS ONE, vol. 3, no. 7, 2008, pp. e2722.
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Francesconi M, Remondini D, Neretti N, Sedivy JM, Cooper LN, Verondini E, Milanesi L, Castellani G.
"Reconstructing networks of pathways via significance analysis of their intersections." BMC Bioinformatics, vol. 9 Suppl 4, 2008, pp. S9.
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Morrish F, Neretti N, Sedivy JM, Hockenbery DM.
"The oncogene c-Myc coordinates regulation of metabolic networks to enable rapid cell cycle entry." Cell Cycle, vol. 7, no. 8, 2008, pp. 1054-66.
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Neretti N, Remondini D, Tatar M, Sedivy JM, Pierini M, Mazzatti D, Powell J, Franceschi C, Castellani GC.
"Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation." BMC Bioinformatics, vol. 8 Suppl 1, 2007, pp. S16.
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McKee AE, Neretti N, Carvalho LE, Meyer CA, Fox EA, Brodsky AS, Silver PA.
"Exon expression profiling reveals stimulus-mediated exon use in neural cells." Genome Biology, vol. 8, no. 8, 2007, pp. R159.
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Yu L, Neretti N, Intrator N.
"Multiple ping sonar accuracy improvement using robust motion estimation and ping fusion." The Journal of the Acoustical Society of America, vol. 119, no. 4, 2006, pp. 2106-13.
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Remondini D, O'Connell B, Intrator N, Sedivy JM, Neretti N, Castellani GC, Cooper LN.
"Targeting c-Myc-activated genes with a correlation method: detection of global changes in large gene expression network dynamics." Proceedings of the National Academy of Sciences, vol. 102, no. 19, 2005, pp. 6902-6.
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Simmons JA, Neretti N, Intrator N, Altes RA, Ferragamo MJ, Sanderson MI.
"Delay accuracy in bat sonar is related to the reciprocal of normalized echo bandwidth, or Q." Proceedings of the National Academy of Sciences, vol. 101, no. 10, 2004, pp. 3638-43.
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Sanderson MI, Neretti N, Intrator N, Simmons JA.
"Evaluation of an auditory model for echo delay accuracy in wideband biosonar." The Journal of the Acoustical Society of America, vol. 114, no. 3, 2003, pp. 1648-59.
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Neretti N, Sanderson MI, Intrator N, Simmons JA.
"Time-frequency model for echo-delay resolution in wideband biosonar." The Journal of the Acoustical Society of America, vol. 113, no. 4 Pt 1, 2003, pp. 2137-45.
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