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Tremble K, Stirparo GG, Bates LE, Maskalenka K, Stuart HT, Jones K, Andersson-Rolf A, Radzisheuskaya A, Koo BK, Bertone P, Silva JCR.
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Stuart HT, Stirparo GG, Lohoff T, Bates LE, Kinoshita M, Lim CY, Sousa EJ, Maskalenka K, Radzisheuskaya A, Malcolm AA, Alves MRP, Lloyd RL, Nestorowa S, Humphreys P, Mansfield W, Reik W, Bertone P, Nichols J, Göttgens B, Silva JCR.
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Labouesse C, Agley CC, Tan BX, Stirparo GG, Stuart HT, Chang Y, Verstreken CM, Mansfield W, Franze K, Bertone P, Oyen ML, Silva JCR, Chalut KJ.
"StemBond hydrogels optimise the mechanical microenvironment for embryonic stem cells." 2019.
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Pękowska A, Klaus B, Xiang W, Severino J, Daigle N, Klein FA, Oleś M, Casellas R, Ellenberg J, Steinmetz LM, Bertone P, Huber W.
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Stirparo GG, Boroviak T, Guo G, Nichols J, Smith A, Bertone P.
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Boroviak T, Stirparo GG, Dietmann S, Hernando-Herraez I, Mohammed H, Reik W, Smith A, Sasaki E, Nichols J, Bertone P.
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Boroviak T, Stirparo GG, Dietmann S, Hernando-Herraez I, Mohammed H, Reik W, Smith A, Sasaki E, Nichols J, Bertone P.
"Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development." BioRxiv, 2018.
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Bornelöv S, Reynolds N, Xenophontos M, Gharbi S, Johnstone E, Floyd R, Ralser M, Signolet J, Loos R, Dietmann S, Bertone P, Hendrich B.
"The Nucleosome Remodeling and Deacetylation complex modulates chromatin structure at sites of active transcription to fine-tune gene expression." Molecular Cell, vol. 71, no. 1, 2018, pp. 56-72.e4.
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Bulstrode H, Johnstone E, Marques-Torrejon MA, Ferguson KM, Bressan RB, Blin C, Grant V, Gogolok S, Gangoso E, Gagrica S, Ender C, Fotaki V, Sproul D, Bertone P, Pollard SM.
"Elevated FOXG1 and SOX2 in glioblastoma enforces neural stem cell identity through transcriptional control of cell cycle and epigenetic regulators." Genes & Development, vol. 31, no. 8, 2017, pp. 757-773.
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Guo G, von Meyenn F, Rostovskaya M, Clarke J, Dietmann S, Baker D, Sahakyan A, Myers S, Bertone P, Reik W, Plath K, Smith A.
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Guo G, von Meyenn F, Rostovskaya M, Clarke J, Dietmann S, Baker D, Sahakyan A, Myers S, Bertone P, Reik W, Plath K, Smith A.
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Stirparo GG, Boroviak T, Guo G, Nichols J, Smith A, Bertone P.
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Xenophontos M, Reynolds N, Gharbi S, Johnstone E, Signolet J, Floyd R, Ralser M, Borneloev S, Dietmann S, Loos R, Bertone P, Hendrich B.
"The Nucleosome Remodelling and Deacetylation complex restricts Mediator access to enhancers to control transcription." [], 2017.
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Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, Marks H, Walker R, Stunnenberg HG, Lilley KS, Nichols J, Reik W, Bertone P, Smith A.
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Krusche B, Ottone C, Clements MP, Johnstone ER, Goetsch K, Lieven H, Mota SG, Singh P, Khadayate S, Ashraf A, Davies T, Pollard SM, De Paola V, Roncaroli F, Martinez-Torrecuadrada J, Bertone P, Parrinello S.
"EphrinB2 drives perivascular invasion and proliferation of glioblastoma stem-like cells." eLife, vol. 5, 2016.
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Scognamiglio R, Cabezas-Wallscheid N, Thier MC, Altamura S, Reyes A, Prendergast ÁM, Baumgärtner D, Carnevalli LS, Atzberger A, Haas S, von Paleske L, Boroviak T, Wörsdörfer P, Essers MA, Kloz U, Eisenman RN, Edenhofer F, Bertone P, Huber W, van der Hoeven F, Smith A, Trumpp A.
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Guo G, von Meyenn F, Santos F, Chen Y, Reik W, Bertone P, Smith A, Nichols J.
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Foti R, Gnan S, Cornacchia D, Dileep V, Bulut-Karslioglu A, Diehl S, Buness A, Klein FA, Huber W, Johnstone E, Loos R, Bertone P, Gilbert DM, Manke T, Jenuwein T, Buonomo SC.
"Nuclear architecture organized by Rif1 underpins the replication-timing program." Molecular Cell, vol. 61, no. 2, 2016, pp. 260-273.
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Bale M, Bertone P, Burton H, Camporesi S, Cavaliere G, Ghevaert C, Golombok S, Hitchcock J, Kahl L, Kent D, Krueger C, Koo B-K, Davies JL, Lewens T, Liddell K, Liddicoat J, Mendez-Ferrer S, Rugg-Gunn P, Skopek J, Smith A, Surani A, Watson C, Wilson R, Yotova R, McGinty S, Sausman C.
"Planning for the future of gene editing: Cambridge Public Policy Strategic Research Initiative (SRI)." 2016.
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Miller A, Ralser M, Kloet SL, Loos R, Nishinakamura R, Bertone P, Vermeulen M, Hendrich B.
"Sall4 controls differentiation of pluripotent cells independently of the Nucleosome Remodelling and Deacetylation (NuRD) complex." Development, vol. 143, no. 17, 2016, pp. 3074-3084.
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Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, Marks H, Walker R, Stunnenberg HG, Lilley K, Nichols J, Reik W, Bertone P, Smith A.
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Carén H, Stricker SH, Bulstrode H, Gagrica S, Johnstone E, Bartlett TE, Feber A, Wilson G, Teschendorff AE, Bertone P, Beck S, Pollard SM.
"Glioblastoma stem cells respond to differentiation cues but fail to undergo commitment and terminal cell-cycle arrest." Stem Cell Reports, vol. 5, no. 5, 2015, pp. 829-842.
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Boroviak T, Loos R, Lombard P, Okahara J, Behr R, Sasaki E, Nichols J, Smith A, Bertone P.
"Lineage-specific profiling delineates the emergence and progression of naive pluripotency in mammalian embryogenesis." Developmental Cell, vol. 35, no. 3, 2015, pp. 366-382.
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Christophorou MA, Castelo-Branco G, Halley-Stott RP, Oliveira CS, Loos R, Radzisheuskaya A, Mowen KA, Bertone P, Silva JC, Zernicka-Goetz M, Nielsen ML, Gurdon JB, Kouzarides T.
"Citrullination regulates pluripotency and histone H1 binding to chromatin." Nature, vol. 507, no. 7490, 2014, pp. 104-108.
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Pękowska A, Klaus B, Klein FA, Anders S, Olés M, Steinmetz LM, Bertone P, Huber W.
"Neural lineage induction reveals multi-scale dynamics of 3D chromatin organization." [], 2014.
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Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W, Reik W, Bertone P, Smith A.
"Resetting transcription factor control circuitry toward ground-state pluripotency in human." Cell, vol. 158, no. 6, 2014, pp. 1254-1269.
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Boroviak T, Loos R, Bertone P, Smith A, Nichols J.
"The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification." Nature Cell Biology, vol. 16, no. 6, 2014, pp. 513-525.
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Chen L, Kostadima M, Martens JHA, Canu G, Garcia SP, Turro E, Downes K, Macaulay IC, Bielczyk-Maczynska E, Coe S, Farrow S, Poudel P, Burden F, Jansen SBG, Astle WJ, Attwood A, Bariana T, de Bono B, Breschi A, Chambers JC, Consortium B, Choudry FA, Clarke L, Coupland P, van der Ent M, Erber WN, Jansen JH, Favier R, Fenech ME, Foad N, Freson K, van Geet C, Gomez K, Guigo R, Hampshire D, Kelly AM, Kerstens HHD, Kooner JS, Laffan M, Lentaigne C, Labalette C, Martin T, Meacham S, Mumford A, Nürnberg S, Palumbo E, van der Reijden BA, Richardson D, Sammut SJ, Slodkowicz G, Tamuri AU, Vasquez L, Voss K, Watt S, Westbury S, Flicek P, Loos R, Goldman N, Bertone P, Read RJ, Richardson S, Cvejic A, Soranzo N, Ouwehand WH, Stunnenberg HG, Frontini M, Rendon A.
"Transcriptional diversity during lineage commitment of human blood progenitors." Science, vol. 345, no. 6204, 2014, pp. 1251033-1251033.
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Danovi D, Folarin A, Gogolok S, Ender C, Elbatsh AM, Engström PG, Stricker SH, Gagrica S, Georgian A, Yu D, U KP, Harvey KJ, Ferretti P, Paddison PJ, Preston JE, Abbott NJ, Bertone P, Smith A, Pollard SM.
"A high-content small molecule screen identifies sensitivity of glioblastoma stem cells to inhibition of polo-like kinase 1." PLoS ONE, vol. 8, no. 10, 2013, pp. e77053.
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Steijger T, Abril JF, Engström PG, Kokocinski F, RGASP Consortium, Hubbard TJ, Guigó R, Harrow J, Bertone P.
"Assessment of transcript reconstruction methods for RNA-seq." Nature Methods, vol. 10, no. 12, 2013, pp. 1177-1184.
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Martello G, Bertone P, Smith A.
"Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor." The EMBO Journal, vol. 32, no. 19, 2013, pp. 2561-2574.
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Cvejic A, Haer-Wigman L, Stephens JC, Kostadima M, Smethurst PA, Frontini M, van den Akker E, Bertone P, Bielczyk-Maczyńska E, Farrow S, Fehrmann RS, Gray A, de Haas M, Haver VG, Jordan G, Karjalainen J, Kerstens HH, Kiddle G, Lloyd-Jones H, Needs M, Poole J, Soussan AA, Rendon A, Rieneck K, Sambrook JG, Schepers H, Silljé HHW, Sipos B, Swinkels D, Tamuri AU, Verweij N, Watkins NA, Westra HJ, Stemple D, Franke L, Soranzo N, Stunnenberg HG, Goldman N, van der Harst P, van der Schoot CE, Ouwehand WH, Albers CA.
"SMIM1 underlies the Vel blood group and influences red blood cell traits." Nature Genetics, vol. 45, no. 5, 2013, pp. 542-545.
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Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, RGASP Consortium, Rätsch G, Goldman N, Hubbard TJ, Harrow J, Guigó R, Bertone P.
"Systematic evaluation of spliced alignment programs for RNA-seq data." Nature Methods, vol. 10, no. 12, 2013, pp. 1185-1191.
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Castelo-Branco G, Amaral PP, Engström PG, Robson SC, Marques SC, Bertone P, Kouzarides T.
"The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells." Genome Biology, vol. 14, no. 9, 2013, pp. R98.
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Goldman N, Bertone P, Chen S, Dessimoz C, LeProust EM, Sipos B, Birney E.
"Towards practical, high-capacity, low-maintenance information storage in synthesized DNA." Nature, vol. 494, no. 7435, 2013, pp. 77-80.
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Stricker SH, Feber A, Engström PG, Carén H, Kurian KM, Takashima Y, Watts C, Way M, Dirks P, Bertone P, Smith A, Beck S, Pollard SM.
"Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner." Genes & Development, vol. 27, no. 6, 2013, pp. 654-669.
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Albers CA, Paul DS, Schulze H, Freson K, Stephens JC, Smethurst PA, Jolley JD, Cvejic A, Kostadima M, Bertone P, Breuning MH, Debili N, Deloukas P, Favier R, Fiedler J, Hobbs CM, Huang N, Hurles ME, Kiddle G, Krapels I, Nurden P, Ruivenkamp CA, Sambrook JG, Smith K, Stemple DL, Strauss G, Thys C, van Geet C, Newbury-Ecob R, Ouwehand WH, Ghevaert C.
"Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome." Nature Genetics, vol. 44, no. 4, 2012, pp. 435-439.
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Engström PG, Tommei D, Stricker SH, Ender C, Pollard SM, Bertone P.
"Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival." Genome Medicine, vol. 4, no. 10, 2012, pp. 76.
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Metzakopian E, Lin W, Salmon-Divon M, Dvinge H, Andersson E, Ericson J, Perlmann T, Whitsett JA, Bertone P, Ang SL.
"Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors." Development, vol. 139, no. 14, 2012, pp. 2625-2634.
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Reynolds N, Latos P, Hynes-Allen A, Loos R, Leaford D, O'Shaughnessy A, Mosaku O, Signolet J, Brennecke P, Kalkan T, Costello I, Humphreys P, Mansfield W, Nakagawa K, Strouboulis J, Behrens A, Bertone P, Hendrich B.
"NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment." Cell Stem Cell, vol. 10, no. 5, 2012, pp. 583-594.
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Albers CA, Cvejic A, Favier R, Bouwmans EE, Alessi MC, Bertone P, Jordan G, Kettleborough RN, Kiddle G, Kostadima M, Read RJ, Sipos B, Sivapalaratnam S, Smethurst PA, Stephens J, Voss K, Nurden A, Rendon A, Nurden P, Ouwehand WH.
"Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome." Nature Genetics, vol. 43, no. 8, 2011, pp. 735-737.
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Reynolds N, Salmon-Divon M, Dvinge H, Hynes-Allen A, Balasooriya G, Leaford D, Behrens A, Bertone P, Hendrich B.
"NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression." The EMBO Journal, vol. 31, no. 3, 2011, pp. 593-605.
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Salmon-Divon M, Dvinge H, Tammoja K, Bertone P.
"PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci." BMC Bioinformatics, vol. 11, no. 1, 2010, pp. 415.
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Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C.
"Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression." RNA, vol. 16, no. 5, 2010, pp. 991-1006.
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Dvinge H, Bertone P.
"HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R." Bioinformatics, vol. 25, no. 24, 2009, pp. 3325-3326.
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Tan DJ, Dvinge H, Christoforou A, Bertone P, Martinez Arias A, Lilley KS.
"Mapping organelle proteins and protein complexes in Drosophila melanogaster." Journal of Proteome Research, vol. 8, no. 6, 2009, pp. 2667-2678.
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Kind J, Vaquerizas JM, Gebhardt P, Gentzel M, Luscombe N, Bertone P, Akhtar A.
"Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila." Cell, vol. 133, no. 5, 2008, pp. 813-828.
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Kirstetter P, Schuster MB, Bereshchenko O, Moore S, Dvinge H, Kurz E, Theilgaard-Mönch K, Månsson R, Pedersen TA, Pabst T, Schrock E, Porse BT, Jacobsen SE, Bertone P, Tenen DG, Nerlov C.
"Modeling of C/EBPα mutant acute myeloid leukemia reveals a common expression signature of committed myeloid leukemia- initiating cells." Cancer Cell, vol. 13, no. 4, 2008, pp. 299-310.
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Borneman AR, Leigh-Bell JA, Yu H, Bertone P, Gerstein M, Snyder M.
"Target hub proteins serve as master regulators of development in yeast." Genes & Development, vol. 20, no. 4, 2006, pp. 435-448.
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Seshasayee AS, Bertone P, Fraser GM, Luscombe NM.
"Transcriptional regulatory networks in bacteria: from input signals to output responses." Current Opinion in Microbiology, vol. 9, no. 5, 2006, pp. 511-519.
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Rozowsky J, Bertone P, Royce T, Weissman S, Snyder S, Gerstein M.
"Analysis of genomic tiling microarrays for transcript mapping and the identification of transcription factor binding sites." Advances in Bioinformatics and Computational Biology, 2005, pp. 28-29.
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Bertone P, Gerstein M, Snyder M.
"Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery." Chromosome Research, vol. 13, no. 3, 2005, pp. 259-274.
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Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, Karro J, Kao MY, Snyder M, Gerstein M.
"Design optimization methods for genomic DNA tiling arrays." Genome Research, vol. 16, no. 2, 2005, pp. 271-281.
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Hartman SE, Bertone P, Nath AK, Royce TE, Gerstein M, Weissman S, Snyder M.
"Global changes in STAT target selection and transcription regulation upon interferon treatments." Genes & Development, vol. 19, no. 24, 2005, pp. 2953-2968.
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Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M.
"Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping." Trends in Genetics, vol. 21, no. 8, 2005, pp. 466-475.
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Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP.
"Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles." Genome Research, vol. 15, no. 5, 2005, pp. 674-680.
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Bertone P, Snyder M.
"Prospects and challenges in proteomics." Plant Physiology, vol. 138, no. 2, 2005, pp. 560-562.
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Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F, Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M.
"CREB binds to multiple loci on human chromosome 22." Molecular and Cellular Biology, vol. 24, no. 9, 2004, pp. 3804-3814.
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Berman P, Bertone P, Dasgupta B, Gerstein M, Kao MY, Snyder M.
"Fast optimal genome tiling with applications to microarray design and homology search." Journal of Computational Biology, vol. 11, no. 4, 2004, pp. 766-785.
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Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M.
"Global identification of human transcribed sequences with genome tiling arrays." Science, vol. 306, no. 5705, 2004, pp. 2242-2246.
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Feingold EA, Good PJ, Guyer MS, Kamholz S, Liefer L, Wetterstrand K, Collins FS, et
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"The ENCODE (ENCyclopedia Of DNA Elements) Project." Science, vol. 306, no. 5696, 2004, pp. 636-640.
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Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M.
"Distribution of NF-κB-binding sites across human chromosome 22." Proceedings of the National Academy of Sciences, vol. 100, no. 21, 2003, pp. 12247-12252.
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Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M.
"ExpressYourself: a modular platform for processing and visualizing microarray data." Nucleic Acids Research, vol. 31, no. 13, 2003, pp. 3477-3482.
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Berman P, Bertone P, DasGupta B, Gerstein M, Kao MY, Snyder M.
"Fast optimal genome tiling with applications to microarray design and homology search." 2003.
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Zheng L, Euskirchen G, Rinn JL, Martone R, Bertone P, Hartman S, Royce T, Nelson K, Sayward F, Luscombe N, Yang J, Li JL, Miller P, Gerstein M, Weissman S, Snyder M.
"Identification of novel functional elements in the human genome." Cold Spring Harbor Symposia on Quantitative Biology, vol. 68, no. 0, 2003, pp. 317-322.
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Harrison PM, Milburn D, Zhang Z, Bertone P, Gerstein M.
"Identification of pseudogenes in the Drosophila melanogaster genome." Nucleic Acids Research, vol. 31, no. 3, 2003, pp. 1033-1037.
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Goh CS, Lan N, Echols N, Douglas SM, Milburn D, Bertone P, Xiao R, Ma LC, Zheng D, Wunderlich Z, Acton T, Montelione GT, Gerstein M.
"SPINE 2: a system for collaborative structural proteomics within a federated database framework." Nucleic Acids Research, vol. 31, no. 11, 2003, pp. 2833-2838.
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Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M.
"The transcriptional activity of human chromosome 22." Genes & Development, vol. 17, no. 4, 2003, pp. 529-540.
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Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P, Gerstein MB, Snyder M.
"An integrated approach for finding overlooked genes in yeast." Nature Biotechnology, vol. 20, no. 1, 2002, pp. 58-63.
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Horak CE, Luscombe NM, Qian J, Bertone P, Piccirrillo S, Gerstein M, Snyder M.
"Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae." Genes & Development, vol. 16, no. 23, 2002, pp. 3017-3033.
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Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M.
"Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes." Nucleic Acids Research, vol. 30, no. 11, 2002, pp. 2515-2523.
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Kumar A, Cheung KH, Marenco L, Tosches N, Masiar P, Liu Y, Bertone P, Miller P, Snyder M.
"Computational methods and bioinformatics tools." Analyzing Gene Expression – A Handbook of Methods: Possibilities and Pitfalls, edited by Lorkowski S, Cullen P, Weinhein, Germany, Wiley-VCH, 2002, pp. 769-904.
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Berman P, Bertone P, DasGupta B, Gerstein M, Kao MY, Snyder M.
"Fast optimal genome tiling with applications to microarray design and homology search." Lecture Notes in Computer Science, 2002, pp. 419-433.
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Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B, Gerstein M.
"GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing." Nucleic Acids Research, vol. 30, no. 20, 2002, pp. 4574-4582.
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Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M.
"Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22." Genome Research, vol. 12, no. 2, 2002, pp. 272-280.
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Balasubramanian S, Harrison P, Hegyi H, Bertone P, Luscombe N, Echols N, McGarvey P, Zhang Z, Gerstein M.
"SNPs on human chromosomes 21 and 22 – analysis in terms of protein features and pseudogenes." Pharmacogenomics, vol. 3, no. 3, 2002, pp. 393-402.
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Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M.
"Global analysis of protein activities using proteome chips." Science, vol. 293, no. 5537, 2001, pp. 2101-2105.
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Bertone P, Gerstein M.
"Integrative data mining: the new direction in bioinformatics." IEEE Engineering in Medicine and Biology Magazine, vol. 20, no. 4, 2001, pp. 33-40.
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Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M.
"SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics." Nucleic Acids Research, vol. 29, no. 13, 2001, pp. 2884-2898.
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Zhu H, Klemic JF, Chang S, Bertone P, Casamayor A, Klemic KG, Smith D, Gerstein M, Reed MA, Snyder M.
"Analysis of yeast protein kinases using protein chips." Nature Genetics, vol. 26, no. 3, 2000, pp. 283-289.
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